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Benedict Monteiro
Education
PhD in Biomedical Sciences
Sanders Lab, BIMSB, Max Delbrück Center
Berlin, DE
Current - 2022
- Developing bioinformatic pipelines to analyse single nucleotide and structural variations in single cell genomic datasets.
MSc Genomic Medicine
King’s Collge/St George’s, University of London
London, UK
2021 - 2020
- Final grade: Distinction (82% overall average mark)
- Awarded academic scholarship at admission.
- Modules covered the generation, analysis and applications of omic data in clinical and research contexts.
- Research project thesis: “Preliminary liquid biopsy analysis of pancreatic ductal adenocarcinoma patients treated with immunotherapy” (76%)
BSc Biochemistry with French for Science
Imperial College London
London, UK
2020 - 2016
- Final grade: First Class Honours (71% overall average mark)
- Final year research project dissertation: “Environmental stress provokes a transcriptomic call to arms in Legionella pneumophila” (80%)
- Advanced final year modules: Bioinformatics (69%), Mechanisms of Gene Expression (70%), Damage & Repair in Biological Systems (72%)
- Cultural dissertation in French: “The importance of the Second Empire for the city of Paris” (74%)
Research Experience
Postgraduate Researcher
Vigilante Lab, CSCRM
King’s College London, UK
2021 - 2021
- Developed a bioinformatic pipeline to analyse circulating tumour DNA from pancreatic ductal adenocarcinoma to predict immunotherapy response.
Undergraduate Researcher
Costa Lab, CMBI
Imperial College London, UK
2020 - 2020
- Analysed RNA-Seq differential expression data to outline the transcriptomic response of the bacteria L. pneumophila to stressors.
Erasmus Research Placement
Zucman-Rossi Lab, CRC
Université de Paris, FR
2019 - 2018
- Worked independently on a bioinformatic analysis of mutational signatures in liver cancer whole genome sequencing data.
- Performed all analyses and designed the results figure for the “mutational signatures” section in a genomic study of a rare type of paediatric liver cancer.
- Updated and maintain the R package Palimpsest to extract and study of new types of mutational signatures.
Teaching Experience
Graduate Teaching Assistant
Department of Life Sciences
Imperial College London, UK
2021 - 2020
- Taught core maths skills to Biology & Biochemistry undergraduates.
Conference Presentations
International PhD Student Cancer Conference (IPSCC)
Poster presentation
Berlin, DE
2024
Innovations in Single Cell Omics (ISCO)
Poster presentation
Barcelona, ES
2024
Berlin Summer Meet
Poster presentation
Berlin, DE
2024
Innovations in Single Cell Omics (ISCO)
Poster presentation
Berlin, DE
2023
Public Outreach
High School Student Lab Tour
Sanders Lab, BIMSB, Max Delbrück Center
Berlin, DE
2024
- Gave an introduction to bioinformatics to high school students
Long Night of Science
Sanders Lab, BIMSB, Max Delbrück Center
Berlin, DE
2024
- Gave lab tours to members of the public during the city-wide open science event.
Publications
p53 terminates the regenerative fetal-like state after colitis-associated injury
Science Advances
N/A
2024
- Hartl K, Bayram Ş, Wetzel A, Harnack C, Lin M, Fischer AS, Liu L, Beccaceci G, Mastrobuoni G, Geisberger S, Forbes M, Monteiro BJE, Macino M, Flores RE, Engelmann C, Mollenkopf HJ, Schupp M, Tacke F, Sanders AD, Kempa S, Berger H, Sigal M. p53 terminates the regenerative fetal-like state after colitis-associated injury. Sci Adv. 2024 Oct 25;10(43):eadp8783. doi: 10.1126/sciadv.adp8783. PMID: 39453996
Integrated genomic analysis identifies driver genes and cisplatin-resistant progenitor phenotype in pediatric liver cancer
Cancer Discovery
N/A
2021
- Hirsch TZ, Pilet J, Morcrette G, Roehrig A, Monteiro BJE, Molina L, Bayard Q, Trépo E, Meunier L, Caruso S, Renault V, Deleuze JF, Fresneau B, Chardot C, Gonzales E, Jacquemin E, Guerin F, Fabre M, Aerts I, Taque S, Laithier V, Branchereau S, Guettier C, Brugières L, Rebouissou S, Letouzé E, Zucman-Rossi J. Integrated Genomic Analysis Identifies Driver Genes and Cisplatin-Resistant Progenitor Phenotype in Pediatric Liver Cancer. Cancer Discov. 2021 Oct;11(10):2524-2543. PMID: 33893148